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1

Primer design for specific diagnosis by PCR of highly variable RNA viruses: Typing of foot-and-mouth disease virus

Ana Rodríguez, Encarnación Martínez-Salas, Joaquín Dopazo, Mercedes Dávila, Juan Carlos Sáiz, Francisco Sobrino

Journal:

Year:

1992

Language:

english

File:

PDF, 1.22 MB

english, 1992

2

RNA Structural Elements of Hepatitis C Virus Controlling Viral RNA Translation and the Implications for Viral Pathogenesis

Piñeiro, David, Martinez-Salas, Encarnación

Journal:

Year:

2012

Language:

english

File:

PDF, 477 KB

english, 2012

3

The quasispecies (extremely heterogeneous) nature of viral RNA genome populations: biological relevance — a review

Domingo, Esteban, Martínez-Salas, Encarnación, Sobrino, Francisco, de la Torre, Juan Carlos, Portela, Agustín, Ortín, Juan, López-Galindez, Cecilio, Pérez-Breña, Pilar, Villanueva, Nieves, Nájera, Raf

Journal:

Year:

1985

Language:

english

File:

PDF, 996 KB

english, 1985

4

Ribosome-dependent conformational flexibility changes and RNA dynamics of IRES domains revealed by differential SHAPE

Lozano, Gloria, Francisco-Velilla, Rosario, Martinez-Salas, Encarnacion

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 3.14 MB

english, 2018

5

Innate immune sensor LGP2 is cleaved by the Leader protease of foot-and-mouth disease virus

Rodríguez Pulido, Miguel, Sánchez-Aparicio, María Teresa, Martínez-Salas, Encarnación, García-Sastre, Adolfo, Sobrino, Francisco, Sáiz, Margarita, Semler, Bert L.

Journal:

Year:

2018

Language:

english

File:

PDF, 7.28 MB

english, 2018

6

Riboproteomic analysis of polypeptides interacting with the internal ribosome-entry site element of foot-and-mouth disease viral RNA

Almudena Pacheco, Sandrine Reigadas, Encarnación Martínez-Salas

Journal:

Year:

2008

Language:

english

File:

PDF, 297 KB

english, 2008

7

Analysis of theilv-linked genes that determine the morphology ofEscherichia coliCells

Encarnación Martínez-Salas, Miguel Vicente

Journal:

Current Microbiology

Year:

1983

Language:

english

File:

PDF, 1.25 MB

english, 1983

8

Molecular evolution of aphthoviruses

Esteban Domingo, Mauricio G. Mateu, Cristina Escarmis, Encarnacion Martinez-Salas, David Andreu, Ernest Giralt, Nuria Verdaguer, Ignasi Fita

Journal:

Year:

1995

Language:

english

File:

PDF, 1.21 MB

english, 1995

9

Cap-independent translation of maize Hsp101

Tzvetanka D. Dinkova, Hilda Zepeda, Encarnación Martínez-Salas, Luz María Martínez, Jorge Nieto-Sotelo, Estela Sánchez de Jiménez

Journal:

The Plant Journal

Year:

2005

Language:

english

File:

PDF, 271 KB

english, 2005

10

Internal translation initiation on the foot-and-mouth disease virus IRES is affected by ribosomal stalk conformation

Francisco Martínez-Azorín, Miguel Remacha, Encarnación Martínez-Salas, Juan P.G. Ballesta

Journal:

Year:

2008

Language:

english

File:

PDF, 179 KB

english, 2008

11

Foot-and-mouth disease virus infection induces proteolytic cleavage of PTB, eIF3a,b, and PABP RNA-binding proteins

Miguel Rodríguez Pulido, Paula Serrano, Margarita Sáiz, Encarnación Martínez-Salas

Journal:

Year:

2007

Language:

english

File:

PDF, 563 KB

english, 2007

12

Susceptibility to viral infection is enhanced by stable expression of 3A or 3AB proteins from foot-and-mouth disease virus

María F. Rosas, Yuri A. Vieira, Raúl Postigo, Miguel A. Martín-Acebes, Rosario Armas-Portela, Encarnación Martínez-Salas, Francisco Sobrino

Journal:

Year:

2008

Language:

english

File:

PDF, 1.66 MB

english, 2008

13

Rescue of internal initiation of translation by RNA complementation provides evidence for a distribution of functions between individual IRES domains

Paula Serrano, Jorge Ramajo, Encarnación Martínez-Salas

Journal:

Year:

2009

Language:

english

File:

PDF, 742 KB

english, 2009

14

Structural analysis provides insights into the modular organization of picornavirus IRES

Noemí Fernández, Ana García-Sacristán, Jorge Ramajo, Carlos Briones, Encarnación Martínez-Salas

Journal:

Year:

2011

Language:

english

File:

PDF, 1.24 MB

english, 2011

15

Specific interference between two unrelated internal ribosome entry site elements impairs translation efficiency

Sandrine Reigadas, Almudena Pacheco, Jorge Ramajo, Sonia López de Quinto, Encarnacion Martinez-Salas

Journal:

Year:

2005

Language:

english

File:

PDF, 355 KB

english, 2005

16

The impact of RNA structure on picornavirus IRES activity

Encarnación Martínez-Salas

Journal:

Trends in Microbiology

Year:

2008

Language:

english

File:

PDF, 453 KB

english, 2008

17

Relevance of RNA structure for the activity of picornavirus IRES elements

Olga Fernández-Miragall, Sonia López de Quinto, Encarnación Martínez-Salas

Journal:

Year:

2009

Language:

english

File:

PDF, 1.11 MB

english, 2009

18

IRES elements: features of the RNA structure contributing to their activity

Encarnación Martínez-Salas, Sonia López de Quinto, Ricardo Ramos, Olga Fernández-Miragall

Journal:

Year:

2002

Language:

english

File:

PDF, 212 KB

english, 2002

19

Preface

Jeffrey Kieft, Encarnacion Martinez-Salas

Journal:

Year:

2009

Language:

english

File:

PDF, 194 KB

english, 2009

20

Response to retreatment with interferon-α plus ribavirin in chronic hepatitis C patients is independent of the NS5A gene nucleotide sequence

Nieves Ibarrola, José A Moreno-Monteagudo, Margarita Sáiz, Carmelo Garcı́a-Monzón, Francisco Sobrino, Luisa Garcı́a-Buey, Oreste Lo Iacono, Ricardo Moreno-Otero, Encarnación Martínez-Salas

Journal:

American Journal of Gastroenterology

Year:

1999

Language:

english

File:

PDF, 182 KB

english, 1999

21

Evolutionary conserved motifs constrain the RNA structure organization of picornavirus IRES

Fernández, Noemí, Buddrus, Lisa, Piñeiro, David, Martínez-Salas, Encarnación

Journal:

Year:

2013

Language:

english

File:

PDF, 778 KB

english, 2013

22

RNA-Binding Proteins Impacting on Internal Initiation of Translation

Martínez-Salas, Encarnación, Lozano, Gloria, Fernandez-Chamorro, Javier, Francisco-Velilla, Rosario, Galan, Alfonso, Diaz, Rosa

Journal:

International Journal of Molecular Sciences

Year:

2013

Language:

english

File:

PDF, 546 KB

english, 2013

23

Sequence of the viral replicase gene from foot-and-mouth disease virus C1-Santa Pau (C-S8)

Martínez-Salas, Encarnacíon, Ortín, Juan, Domingo, Esteban

Journal:

Year:

1985

Language:

english

File:

PDF, 764 KB

english, 1985

24

3D gene of foot-and-mouth disease virus

Villaverde, Antonio, Martínez-Salas, Encarnación, Domingo, Esteban

Journal:

Journal of Molecular Biology

Year:

1988

Language:

english

File:

PDF, 601 KB

english, 1988

25

Enhanced IRES activity by the 3′UTR element determines the virulence of FMDV isolates

García-Nuñez, Soledad, Gismondi, María Inés, König, Guido, Berinstein, Analía, Taboga, Oscar, Rieder, Elizabeth, Martínez-Salas, Encarnación, Carrillo, Elisa

Journal:

Year:

2014

Language:

english

File:

PDF, 2.92 MB

english, 2014

26

Magnesium-dependent folding of a picornavirus IRES element modulates RNA conformation and eIF4G interaction

Lozano, Gloria, Fernandez, Noemi, Martinez-Salas, Encarnacion

Journal:

Year:

2014

Language:

english

File:

PDF, 1.59 MB

english, 2014

27

Response to retreatment with interferon-? plus ribavirin in chronic hepatitis C patients is independent of the NS5A gene nucleotide sequence

Ibarrola, Nieves, Moreno-Monteagudo, José A., Sáiz, Margarita, García-Monzón, Carmelo, Sobrino, Francisco, García-Buey, Luisa, Lo Iacono, Oreste, Moreno-Otero, Ricardo, Martínez-Salas, Encarnación

Journal:

American Journal of Gastroenterology

Year:

1999

Language:

english

File:

PDF, 180 KB

english, 1999

28

Picornavirus IRES elements: RNA structure and host protein interactions

Martínez-Salas, Encarnación, Francisco-Velilla, Rosario, Fernandez-Chamorro, Javier, Lozano, Gloria, Diaz-Toledano, Rosa

Journal:

Year:

2015

Language:

english

File:

PDF, 1.25 MB

english, 2015

29

Using RNA inverse folding to identify IRES-like structural subdomains

Dotu, Ivan, Lozano, Gloria, Clote, Peter, Martinez-Salas, Encarnacion

Journal:

Year:

2013

Language:

english

File:

PDF, 2.65 MB

english, 2013

30

Local RNA flexibility perturbation of the IRES element induced by a novel ligand inhibits viral RNA translation

Lozano, Gloria, Trapote, Alejandro, Ramajo, Jorge, Elduque, Xavier, Grandas, Anna, Robles, Jordi, Pedroso, Enrique, Martínez-Salas, Encarnación

Journal:

Year:

2015

Language:

english

File:

PDF, 1.72 MB

english, 2015

31

Structural insights into viral IRES-dependent translation mechanisms

Lozano, Gloria, Martínez-Salas, Encarnación

Journal:

Current Opinion in Virology

Year:

2015

Language:

english

File:

PDF, 1.41 MB

english, 2015

32

Alternative Mechanisms to Initiate Translation in Eukaryotic mRNAs

Martínez-Salas, Encarnación, Piñeiro, David, Fernández, Noemí

Journal:

Comparative and Functional Genomics

Year:

2012

Language:

english

File:

PDF, 370 KB

english, 2012

33

Insights into the Biology of IRES Elements through Riboproteomic Approaches

Pacheco, Almudena, Martinez-Salas, Encarnacion

Journal:

Journal of Biomedicine and Biotechnology

Year:

2010

Language:

english

File:

PDF, 225 KB

english, 2010

34

RNA–protein interaction methods to study viral IRES elements

Francisco-Velilla, Rosario, Fernandez-Chamorro, Javier, Lozano, Gloria, Diaz-Toledano, Rosa, Martínez-Salas, Encarnación

Journal:

Year:

2015

Language:

english

File:

PDF, 1.40 MB

english, 2015

35

Fingerprinting the junctions of RNA structure by an open-paddlewheel diruthenium compound

Lozano, Gloria, Jimenez-Aparicio, Reyes, Herrero, Santiago, Martinez-Salas, Encarnacion

Journal:

Year:

2016

Language:

english

File:

PDF, 939 KB

english, 2016

36

Modeling three-dimensional structural motifs of viral IRES

Lozano, Gloria, Fernandez, Noemi, Martinez-Salas, Encarnacion

Journal:

Journal of Molecular Biology

Year:

2016

Language:

english

File:

PDF, 703 KB

english, 2016

37

EVIDENCE FOR THE PRESENCE OF SIGNALS COORDINATING GROWTH AND DIVISION IN Escherichia coli

Martínez-Salas, Encarnación, Tormo, Antonio, Vicente, Miguel

Journal:

Biochemical Society Transactions

Year:

1981

Language:

english

File:

PDF, 128 KB

english, 1981

38

RNAiFold2T: Constraint Programming design of thermo-IRES switches

Garcia-Martin, Juan Antonio, Dotu, Ivan, Fernandez-Chamorro, Javier, Lozano, Gloria, Ramajo, Jorge, Martinez-Salas, Encarnacion, Clote, Peter

Journal:

Year:

2016

Language:

english

File:

PDF, 661 KB

english, 2016

39

The RNA-binding protein Gemin5 binds directly to the ribosome and regulates global translation

Francisco-Velilla, Rosario, Fernandez-Chamorro, Javier, Ramajo, Jorge, Martinez-Salas, Encarnación

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 4.71 MB

english, 2016

40

Designing synthetic RNAs to determine the relevance of structural motifs in picornavirus IRES elements

Fernandez-Chamorro, Javier, Lozano, Gloria, Garcia-Martin, Juan Antonio, Ramajo, Jorge, Dotu, Ivan, Clote, Peter, Martinez-Salas, Encarnacion

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.36 MB

english, 2016

41

G3BP1 interacts directly with the FMDV IRES and negatively regulates translation

Galan, Alfonso, Lozano, Gloria, Piñeiro, David, Martinez-Salas, Encarnacion

Journal:

Year:

2017

Language:

english

File:

PDF, 1.49 MB

english, 2017

42

The landscape of the non-canonical RNA-binding site of Gemin5 unveils a feedback loop counteracting the negative effect on translation

Francisco-Velilla, Rosario, Fernandez-Chamorro, Javier, Dotu, Ivan, Martinez-Salas, Encarnación

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 4.42 MB

english, 2018

43

Exploring IRES Region Accessibility by Interference of Foot-and-Mouth Disease Virus Infectivity

Fajardo, Teodoro, Rosas, Maria Flora, Sobrino, Francisco, Martinez-Salas, Encarnacion, Jang, Sung Key

Journal:

Year:

2012

Language:

english

File:

PDF, 1.14 MB

english, 2012

44

Functional and Structural Analysis of Maize Hsp101 IRES

Jiménez-González, Augusto Samuel, Fernández, Noemí, Martínez-Salas, Encarnación, Sánchez de Jiménez, Estela, Preiss, Thomas

Journal:

Year:

2014

Language:

english

File:

PDF, 851 KB

english, 2014

45

Insights into Structural and Mechanistic Features of Viral IRES Elements

Martinez-Salas, Encarnacion, Francisco-Velilla, Rosario, Fernandez-Chamorro, Javier, Embarek, Azman M.

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 1.43 MB

english, 2018

46

Deconstructing internal ribosome entry site elements: an update of structural motifs and functional divergences

Lozano, Gloria, Francisco-Velilla, Rosario, Martinez-Salas, Encarnacion

Journal:

Year:

2018

Language:

english

File:

PDF, 859 KB

english, 2018

47

A Combined ELONA-(RT)qPCR Approach for Characterizing DNA and RNA Aptamers Selected against PCBP-2

Moreno, Miguel, Fernández-Algar, María, Fernández-Chamorro, Javier, Ramajo, Jorge, Martínez-Salas, Encarnación, Briones, Carlos

Journal:

Year:

2019

File:

PDF, 2.84 MB

2019

48

Structural basis for the dimerization of Gemin5 and its role in protein recruitment and translation control

Moreno-Morcillo, María, Francisco-Velilla, Rosario, Embarc-Buh, Azman, Fernández-Chamorro, Javier, Ramón-Maiques, Santiago, Martinez-Salas, Encarnacion

Journal:

Nucleic Acids Research

Year:

2019

File:

PDF, 3.82 MB

2019

49

Interaction of the eIF4G initiation factor with the aphthovirus IRES is essential for internal translation initiation in vivo

DE QUINTO, SONIA LÓPEZ, MARTÍNEZ-SALAS, ENCARNACIÓN

Journal:

Year:

2000

File:

PDF, 756 KB

2000

50

IRES interaction with translation initiation factors: Functional characterization of novel RNA contacts with eIF3, eIF4B, and eIF4GII

DE QUINTO, SONIA LÓPEZ, LAFUENTE, ESTHER, MARTÍNEZ-SALAS, ENCARNACIÓN

Journal:

Year:

2001

File:

PDF, 434 KB

2001